Scaffold Ga0119945_1002006

Overview

Basic Information

• Taxon OID: 3300029933
• Scaffold ID: Ga0119945_1002006
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3032
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010247	Metagenome / Metatranscriptome	306	Y
F013082	Metagenome	274	Y
F019968	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119945_10020061	F010247	AGGAG	MNVQGVVKYVYDNRLTKDGTPNKFPNFKFKVNDQEIVLWSSILHPAIAKGKNVSVTCGASKKNGSLFVLSKEDKTPMIQELPTGANAKPDTSFNVDDFEADNFNTAVTTIEKEIADRPVSKAFNKDEYMFVMALLKSGIESGKIDVTKEEIDLKIKDYKFLFQINFHN
Ga0119945_100200610	F019968	AGG	MAKKEIGVICSMTYFEMKMMVAVLSRILLDNEIRGEHTKKRIFNLISKLNGMLTKQGYKN
Ga0119945_10020064	F013082	AGGA	MSSIKTVQQEINRLLLESKTNRYITSNEAPYYYDLCSVEDKTISLDKFYKKFPYHNPDFNSEYWQNQYKKWKDLWKQSTI