Scaffold Ga0119944_1022072

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1022072
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 859
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F011753	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10220721	F011753	N/A	PYIRTFSRWAKDNVEKTYWCEKALVGAGYAGRCDAYVRLKGIGDAIIDLKNRKVNPKYDPFYDTDCAQLWAYRIASENPKAACVSVVLASNDPESIRHHVWDEEELYQAGIAFSAMLKVWSWAKQYVPPGMKL
Ga0119944_10220722	F002009	GGA	MNPPTIEDMGKAAEEIVWRVMGKGSDKSKYGEWFLVDRPVHDYHIARAIRHLSTAMMQLQRSTPCPDNNGETATDHLERAVVRALFVWAQVKKEVPRL