Scaffold Ga0119944_1019734

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1019734
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 924
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F010081	Metagenome / Metatranscriptome	308	Y
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10197342	F010081	N/A	MQNKIDDIIKEHCLKMQEVDKTKSIPMIVKDLDHIVYAMYRDLYGLRDIRSNNYHLNSFTADDKKGHCC
Ga0119944_10197343	F007859	AGAAG	MKKLLIIALLSTGCTSGMYLRYNYYKALERLPQCSKVHSINNKYITYSMIEQSTNNVYTLHTNVYQAYYNCDGVIYKIVKTNAK
Ga0119944_10197344	F042296	AGAAG	MNLFKSVIKWTAIGLFACFAYAATLPEPIKLYVIYTYKFNERVIEKIFIKKENAQKYCEQFKDSHDYTFEEVTVKE