Scaffold Ga0119944_1008940

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1008940
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1533
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010746	Metagenome / Metatranscriptome	299	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10089401	F035200	GAGG	MNIKYIVLRDGYRVSEDMHSDLKEAEAEAEFWRSVIRRWPDGTKVIIKKI
Ga0119944_10089402	F010746	N/A	MTYKCAVSGEAIPPERVEALQVLGVPESQWTKKEYSQVKKLRAVYAGDDGSNDIVLCDKVEGGSLFESEIIAEVEE
Ga0119944_10089403	F016115	AGGAG	LKILEESFTSKGFKLQQVKRDGDIAIYKKQLDDPESQNYHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCNSIEDANKRFGELQEKLTNYNATSILPSGEKRGRGRPRKIA
Ga0119944_10089404	F020860	N/A	MNITKVKKLAEGGYALYSIDPKTKQETQVGYMGENLDPKGWLPEGVKIENS