Scaffold Ga0119944_1002725

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1002725
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3014
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F044450	Metagenome / Metatranscriptome	154	N
F053995	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10027252	F024770	AGGAG	MAVTHSRVSVGTTATKLTSDYDGKDGQTINVQNPSGGADVFIGGEGVTTTDYGYLLKADTSFSVELQDDEKLYAVVASSTQTVNIIRQGT
Ga0119944_10027253	F044450	N/A	MKAEILKSMLVDGRKVVAGDIVDVKGWRHAKALARNRYIRLIEDGSATAEISEEKTESKPKAPKKKSAE
Ga0119944_10027254	F053995	AGGAG	MALVNRLSKGEVAVGALQVGDNDTVYGIEFGTVAIDPASLNATTRGATTFTLTGAATTDIIIVNPPSTLNDDLIFCGAAVTAADEVTIYLYNPTAGSINQGEATFSYCWIDTTA