Scaffold Ga0119944_1002005

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1002005
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3577
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040004	Metagenome / Metatranscriptome	162	N
F052563	Metagenome / Metatranscriptome	142	N
F057330	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10020053	F040004	GAGG	MKESRWDIPKPNFKKDLEFGKQGEEQVKQFLQGIVNGSFEVKSDRYRNGKMVVEIAQNPRKHGWKPSGIMVTEAEWWVYVYTMNQAMIVVSTERLKRYIKMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDSAYDDVKE
Ga0119944_10020056	F052563	GGAG	MVYKQTVCMFITKRKNMSSEESYGWIYDIIPAKQVEEIELKAERLQQNLDNGVNIVLSATNDSAIRLCRAYHDGTQGNIEAWLHIMGFLDALIGTIEEHLEDEGIDPYAK
Ga0119944_10020058	F057330	GAG	MRPVIVLWDDAYSEDEWMSVEHYNPKPETPNISIGYIVAYNNDYLHIASTIDQDGGNCCGIMAIPYDMIVYVAPLQILSEAKMYGDKEEFERYLQGKFAQRPEVYEFIEPAEISSETNPEPSV