Scaffold Ga0119944_1001788

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1001788
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3775
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F005389	Metagenome / Metatranscriptome	402	Y
F009005	Metagenome / Metatranscriptome	324	Y
F029999	Metagenome / Metatranscriptome	186	Y
F082161	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10017881	F000785	N/A	MRVSNKTKGMRFDCNRLWNWANEKLGPSKCEAIAFYWDMRDEAECGYYDWEKTIWINLAQCKRMISVQKTLLHEWTHAQQRFRWYNHYNIKYGYKNNPYEIQARQNEKLVKRAYKRKTK
Ga0119944_100178810	F029999	N/A	MNNPFKNFSASKMSENNRFSVSVQYTDILGNTHRIECKTRKALNEARAFLSIFKAEAARLNEILREYPVSMGKFPKKFHKEIKSDLQAAGFGTISKFILK
Ga0119944_10017882	F082161	N/A	VHTNEKPNRPGRGKKVQPGEQVANNRGTHCTITLFENPSGEYYPVVDRGERPTIIRGEYHPIGNRFHYPKVWGTKYAAKVLLEHKIKVQEDILRDAETELGKLQRCLESIKDWSDTDQ
Ga0119944_10017883	F009005	N/A	MLQLTESEMLQRARQIGMDEELLSYAKQIQRQLSADGDTADWGDCLEMAYNELIINEL
Ga0119944_10017888	F005389	N/A	MAKNRKAAKRGNIYETVSNNIQKITRPSGTVSYRVRVTEDGTMYSQYTNSLKAAKTLRNEWIG