Scaffold Ga0119944_1001386

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1001386
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4312
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F010915	Metagenome / Metatranscriptome	297	Y
F037694	Metagenome / Metatranscriptome	167	N
F054024	Metagenome	140	N
F068462	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10013861	F010915	AGAAG	MKQKLPPHNMIVVVQVGLDLYNLSYVKYVDHDVVQYVKHNLNAEDIAQFLGNN
Ga0119944_10013862	F037694	N/A	MLNKEQAFLVNEFIRKHATRNLWEVSDKLYTLLSEIKKIEELPQNNETEIAAA
Ga0119944_10013863	F006546	N/A	MKWKYIGNRAGDAKKGEQYIVEICEDTENYAKKDMPQVITAVVVQPPSPRNNTFFSIRTGDSIKICNPYYEMMKYSHPGFVPVKE
Ga0119944_10013864	F068462	N/A	MSDITYTWKVNNVKCYKDLNGYQDYVYQTYWNCAAATLGPTGQAYDSSFAGATPLGTGAASISGYAFKPFADLTQDDVLNWIWASLPSGAGKEYYEQKVSGELVYKMTYVTEEPALPWNPPAPTGTP
Ga0119944_10013868	F054024	N/A	MSDKYSNHFYIEGPDDDLVNVTKDLDFADGSINYDGWEIEGGSAVLHFDGYFCPFDEVKNASAKYPSLKIIFRFTHELLTAGLYIYDGGKIKLRSYYDWDTGESSVKKYD