Scaffold Ga0119944

Basic Information
Taxon OID	3300029930 Open in IMG/M
Scaffold ID	Ga0119944_1000755 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029930 Open in IMG/M

Scaffold ID

Ga0119944_1000755 Open in IMG/M

Source Dataset Name

Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hong Kong

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5828
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (35.29%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

5828

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (35.29%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)	.5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

China: Pearl River Delta area

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006260	Metagenome / Metatranscriptome	377	Y
F007798	Metagenome / Metatranscriptome	344	Y
F009604	Metagenome / Metatranscriptome	315	Y
F010397	Metagenome / Metatranscriptome	304	Y
F019824	Metagenome / Metatranscriptome	227	Y
F023346	Metagenome / Metatranscriptome	210	Y
F039627	Metagenome / Metatranscriptome	163	N
F079812	Metagenome / Metatranscriptome	115	N
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10007551	F006260	N/A	METELTIKDKVKNPIIIQHDDLKFDGKNITIPRYWVDSLCEYIKDYKTDGELEADIEDYQAFRQFLWDVQEYKNKGN
Ga0119944_100075511	F079812	N/A	MSTKYVMDGSNRKIGYVNDTGSVIYAHGVNGENVGYYQKSSDTTFDRSGKRYGFGDLTNALIFEASKRF
Ga0119944_100075512	F091907	N/A	MNKTGRKATQVNEITDRTFTIVDLGNANTNVKTPTLRMHIKRSVANGRYSVAGKVKTGKRGKPSIVYTYNAVTTNSQTATA
Ga0119944_100075515	F007798	N/A	MKDITLKQLVRDRNGQPRGMVVATVIDNTIRLGWSHTNTKAGDRFDKCKALIIALGRAENGWGPNTIVPVSTRKVLDKMVDRAVRYYKNVPVTL
Ga0119944_100075516	F019824	N/A	MDKYITDNFTGSIDDLLNHCSQLDTNKVEEQVKAEEKEACIAVIMQECECDAEEAEAIYKDISLAETKQIIDKMVEDGLVYVSGTNEDGEPLFSLTELGKAVREEMEKNK
Ga0119944_10007554	F010397	AGGAG	MNVNEFERTKPVVTMHKINELIQLIEDERIKTEILYKDRVRSLEDISLKLKDMKRSFTRG
Ga0119944_10007557	F023346	N/A	MNKISKNIILTYAKGIRTIQTEQIDPYLNLIEAELIKLFPELKDREDNALNWAYDVMNAESNAEVVETLERLEKIIGEERASNWTCSYCGKNTYNDDVEYLFGTNHISCTLKEDIKNRSHNDPDYILDPNRRKIDDLEKELRETKRSLVNLELQLEHLRRDYHHEPTN
Ga0119944_10007558	F009604	N/A	MIKCGCGNEIHPERYELGYKICLTCGDNSAKRSQKYGYLHFGHKTAGSIVITSKKAFDNYAKVSYRKGKASNMAYASRLSTAF
Ga0119944_10007559	F039627	N/A	MTASFYKTVYQRKFEELPRWKKLAIVEDSERNNWSGILTDFVKAVIEEAEKEYANSKKSESTIPKEFVPELEIKSKKTIKKKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119944_1000755

Overview

Ecosystem & Geography

Associated Families

Sequences