Scaffold Ga0119944_1000367

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000367
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7863
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F033428	Metagenome	177	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100036712	F041769	AGGAG	MTYDIDALRQMNEEAQLRIAELSTALAHVTEQRDNLEDSLTAAIREVDAYKQQIASLTTTIERLRLHIQQGVEL
Ga0119944_100036715	F033428	AGAAGG	VSAIEGQLVAAEDVAILKQLFNLISEKCRTEIREISDEAFGAISMNPPTERRVGIARILLEVAEQEGHIDKDLVRSICTLRTGKHYPSAGFALADLSWIDAERVWSTFQDIYAERVELEYIPESNHYTIKEHHHVR
Ga0119944_10003677	F051124	N/A	MTKKTDPLELYINSVGAGWCVRYVMIAIVEDEQGDQQFLVQASPNQTAAETIGLCEAVSHIQKAKIARAWIREEDETDDE
Ga0119944_10003679	F028157	AGGA	VSIADPKFATVLADSDGHSRWVAHIDATDVMSAYRQGGVHLLVTLDPEGNITVAFKPGRHWEATWSPPISLDRK