NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000267

Scaffold Ga0119944_1000267


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000267 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9032
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013631Metagenome / Metatranscriptome269Y
F027828Metagenome / Metatranscriptome193Y
F081258Metagenome / Metatranscriptome114Y
F082582Metagenome / Metatranscriptome113Y
F084145Metagenome / Metatranscriptome112Y
F101038Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10002671F013631GGAMILDVFHYTVSRWDWQDGNVNQMWIQEIEESPDVYRYVAVAYNPRKNTSMVMSKPRCYADTLQWVRSFCASFCILPEYC
Ga0119944_100026712F101038GAGGMPCHPCSLFSTTMELVNSFPPVDAAVNKLKEFDYVQLGEDVIQFTATVSAVVIGIASYVWTAFQLWWDDNGETVQVNFIRFVVNVIDFIGAVAYATPKVYRWMQLNTNRLIDSLFFQVAF
Ga0119944_100026717F082582N/AMTAVATLPVDVMVGMLRKGDTGNDILNILNVLVPDQTELTREQVCEDLAIADCPENDDEIEAYIANATV
Ga0119944_100026718F084145N/AMFVSCPVSFDLIDAEWYDTVDEAKEDALDWSVELSGENVIIYEAIEEDDNSYQFNKVYSICA
Ga0119944_10002672F081258N/AMTFTFPRLSAGIYEVQKDSNTVGFIRKASTAKWIVTDVVDTPQHVSKTLKDAKYAAENFIIFDVVDNTQEPEYNESVQDEKVNEELNTVVEGSLHCYTQIPGTDEFEEVCPSTFGFSTPTLEPIEF
Ga0119944_10002678F027828GGAGMTTLLETVLMTEELLNEKQLTALRDILYSYKEFQLELYDYPPEDTLFTKAQRELFEIFDVDQ
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