Scaffold Ga0119944_1000235

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000235
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9850
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F003582	Metagenome / Metatranscriptome	478	Y
F012975	Metagenome / Metatranscriptome	275	Y
F023851	Metagenome / Metatranscriptome	208	Y
F073544	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100023511	F023851	N/A	MCESCISNRYEPRWVIILAGRQSGSDSVKEFIIKRRYCGVEISASELLV
Ga0119944_100023512	F073544	N/A	VYRVKRYYDIVNIVFLHAERLYGSTESLGLYASKIKYIKDGVEVEELFNNEDFTVMDEIVFEHVEEDNK
Ga0119944_100023513	F000473	AGG	MTSNIYDDKHFKHGINLWTGEPNKPVFYSQEMRKRVREIQKPVPDLMMDVVKYPEFLALRLYEDNFIKYDGIKKEMVIAYVDRVKKLIESYGVRCELEGVPSEKIL
Ga0119944_100023515	F012975	GGA	VLNLTLKGVEVFIQRYNKNNQESYWENYDLIIWKKDYAGYTNIKGTFRNNSWGISDRISVDTDGIWRLPKRYVRHFK
Ga0119944_100023518	F003582	N/A	MNTYRVKLEIEAEVEAFDEGDALDYANDIFGVDDEIKNVKVISVKEK