Scaffold Ga0119944_1000130

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000130
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12402
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011666	Metagenome	288	Y
F033013	Metagenome / Metatranscriptome	178	Y
F038240	Metagenome / Metatranscriptome	166	Y
F056612	Metagenome / Metatranscriptome	137	N
F091645	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100013011	F011666	GAGG	MQPSTLMEWHPIERTQESYFSEVATAKMLEEWLKNGDIKGIYNAALLLNTALHQQRTMAKWLAGEAARNLGRPELADEMLQKAISQDQA
Ga0119944_100013015	F091645	N/A	MAIDFTALFPEEPQPNSGPGMSYCVAPNARMFDYELVMPGERRMRGCLRAVDAKDAKRILLNRHPAATQIDIGKGRRIFSSSKKA
Ga0119944_100013017	F056612	GAG	MSDFESAFDAKLTLFDVKQKKSDKGPDKTGTVEIELSEAMKLAEYLTAHPGEDGYGGKTVIKIPVSAWNQTSTTGTEYISGKLWAKKPDTVGMKPVF
Ga0119944_100013018	F038240	N/A	MATPAGNKMRVQVLLDPEALSYMEREVQLRYNTANRVTVSSLANEIIKSHYAILESQDE
Ga0119944_100013020	F033013	N/A	DARQPWKSGYGVLVLQPFAMAISLTAKSKSSKTVMLHLSPELYARIQNAAKRHKLPAAVAMRQMLEQAIDEVESNEA