Scaffold Ga0119944_1000081

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119944_1000081

Scaffold Ga0119944_1000081

Overview

Basic Information
Taxon OID	3300029930 Open in IMG/M
Scaffold ID	Ga0119944_1000081 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14962
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (82.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012967	Metagenome / Metatranscriptome	275	Y
F016938	Metagenome / Metatranscriptome	243	Y
F022591	Metagenome / Metatranscriptome	213	Y
F069738	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10000812	F069738	N/A	MKLDKIQKKIDKLALSWVGEKSVPAIIRGLNQSFLKSIIYFTSNRYDEEYLEHHSVIVSGQYCPRILSTIPENIMITLSFPKNKKKVTITDKESQNLALKIARAIHHEYRHKHQQRGRGYVYTKQYSPKKRQNRLKVMYYGNPDEVDAHAYETQAEKLDINKLRKAHKIGWRESEAIFMYRLHFRKTDPKVWKRFLKKVYKNNGRRERSNTI
Ga0119944_100008120	F012967	AGG	MMTNEYRRSVLAPKPRVEFDPRNKNHMLDFARFVKYNNWKEGCSYFLEDPYTDIPTMIRAKIAAAVVATFAEKV
Ga0119944_100008124	F016938	N/A	MTTKRLVLSKIGVDMKKQTETLLSEAIDLVNGVDHVLANTMTQYDVSAKDCYNLAEKLERACHLLLVIGDRKTQEDLNRIPLNEGVPF
Ga0119944_100008127	F022591	N/A	MWKCYNILMKYENVVKIGDVVKSLDFVGVNDCYMVGLVTAVLSDGTFRANTIKRVWQGKVDKRFPSDTFVAPLPGNSFFDDLAEAKNAEPRVQVVA

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