Scaffold Ga0119944

Basic Information
Taxon OID	3300029930 Open in IMG/M
Scaffold ID	Ga0119944_1000075 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029930 Open in IMG/M

Scaffold ID

Ga0119944_1000075 Open in IMG/M

Source Dataset Name

Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hong Kong

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15304
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (38.10%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15304

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (38.10%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)	.5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

China: Pearl River Delta area

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020882	Metagenome / Metatranscriptome	221	Y
F021983	Metagenome / Metatranscriptome	216	Y
F031493	Metagenome / Metatranscriptome	182	Y
F084133	Metagenome / Metatranscriptome	112	Y
F087174	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100007511	F021983	N/A	MEEWPTIGMGNLQAMMVMRQQSAPTPSINAFDPYQAMLRRKQSNMQNDTGYINAEVQQYDPKDIQALEEFCQQYGILGFNFGKMNPRSALQMLKNKMGIVEKVNNKKMLLD
Ga0119944_100007513	F084133	AGGA	MFNNRIDGMNQAPNVNFGLKDTQSVQCTECKGEVFQNGVIFRKVSKILAGTDKDALVPINIPYCVNCLEPLDDLLPSELRKQKFTL
Ga0119944_100007520	F087174	N/A	MSYYIKDTTVNKVITFTDPNEVVSYLENLCRKQLKKTRKEMMFEMESLGHGYDDPQGVNFTTMMGEYFEVGALKKDGRMVRTNIHELARNLKYRKEMGD
Ga0119944_10000757	F020882	N/A	MSKLQELGDTGDRMMQGLPFAQGGAVSGASDLSTFVSPDVTQDPNHFGTLTDKSKITADANDSMSKITPFGPYTGQNPRDFVGDVEKIKYKVTPDEVLAGIDYEMKKLVLKDKQVAKQNVVNNLKKDRQYYSKLHMLGIEDGDEIIKPEDYRTPQEKAIAEIMKDLHEKKKQRRNWS
Ga0119944_10000758	F031493	GGAG	MRNFAKDGPPKYRKPDPLHKNWHYIGDGKPHDPSLGSEPMRGRRWMIDPGAGSGKSFDKFQQGLKND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119944_1000075

Overview

Ecosystem & Geography

Associated Families

Sequences