Scaffold Ga0119944

Basic Information
Taxon OID	3300029930 Open in IMG/M
Scaffold ID	Ga0119944_1000060 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029930 Open in IMG/M

Scaffold ID

Ga0119944_1000060 Open in IMG/M

Source Dataset Name

Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hong Kong

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16317
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (77.50%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

16317

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (77.50%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)	.5
Location on Map

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Source Dataset Sampling Location

Location Name

China: Pearl River Delta area

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F003768	Metagenome	469	Y
F022860	Metagenome / Metatranscriptome	212	Y
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F060870	Metagenome	132	Y
F078657	Metagenome	116	Y
F103171	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100006012	F033780	AGGA	MVSPCAWSLVAVHWIDAFDSSNGWISTKDYKAKPQHVVSVGWLWPDILDGYLSVTCSYCPDEEPEMDTVGMVTHIPVGMVQKVVTLGHPQL
Ga0119944_10000602	F003768	GGTGG	MAHFARIENGIVREVIVVGNDDAPTEAAGKAFIASIGLAGEWIQTSYNNNPVEGASRGKYAGIGDLWDGSVFASPVSGEPK
Ga0119944_100006020	F078657	AGG	MTENQSIFYEAWITDLQRDLDALREDKRELLRKVAQLEQQLAEYGIKINNLIQHRGDE
Ga0119944_100006021	F045719	AGGAG	MSATWYKLKSGSWGVKIRHDGKPGESVLVTNKKGEEKLVFLVARAAKFDDAQLWEITTDEPETAPTHKTLDEEPF
Ga0119944_10000604	F022860	AGGA	MKKILGYITENSWTLAGTGLVLITLSGPTLRQALWITGVALVLHSILTFTTGEDSE
Ga0119944_10000605	F003378	GAG	MEVANKTIAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLAAASTDGELTSEEIAEAFGKKA
Ga0119944_10000607	F060870	GAGG	VDGNWALILAAVVTAVGGIIVAVLQQFKKENHTDHQVVLGMLKVVHKGQQRVEDKVERLDERLDHHIEFHATRGMLDNGRTADQNGVETNRNLSA
Ga0119944_10000608	F103171	AGGGGG	MAEQLTKMELKRIATYLRKVYPGVAEQDELWNLIEKIEQLAKGKHARSTGRRGGSHQSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119944_1000060

Overview

Ecosystem & Geography

Associated Families

Sequences