Scaffold Ga0119944_1000051

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000051
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17256
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (52.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007971	Metagenome / Metatranscriptome	341	Y
F008238	Metagenome / Metatranscriptome	336	Y
F008617	Metagenome / Metatranscriptome	330	Y
F018140	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100005125	F008617	GAGG	VINRINNAICFLIAAAAFAMIGLEASGHHGMTHSGTQVEVRR
Ga0119944_100005131	F008238	GAG	MSFKLNLSIFKSTKPESKIDFSGMMNIKVEELDALCRYVLSQTPDQYGSVQVPISGWKKTSQKGLAYVSAVAQPPRDYVDNVAHNLAAATGGAVSELEDDVF
Ga0119944_10000515	F007971	N/A	MAVRSKTGTARIEHQPGPPKTTRQGYGQQSRPRRRGRKPLRGQGR
Ga0119944_10000517	F018140	GAG	MADDPKTVSGVFAASLPAALAAGMVAIGALLISMQVQSARIEATLVQMAKSVEELKIDARSELADLDKRVRALEMRP