NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311347_10417311

Scaffold Ga0311347_10417311


Overview

Basic Information
Taxon OID3300029923 Open in IMG/M
Scaffold IDGa0311347_10417311 Open in IMG/M
Source Dataset NameII_Fen_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047997Metagenome149Y
F051569Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0311347_104173111F047997AGGGGGLTGNDDQVIYSDDYTRLFTYQSRQFTAGDLSLKAINGVQWNAALPAAVIAAAVTVVTAAGLWVVGFSPWWSVLLFPVPALVVYVRMARDRAGGLTESEKLRLAWNYRYSQPREVLGLGENTEPTDFAWDVILWLP
Ga0311347_104173112F051569N/ATESAALTGRSLANTTYTAAPLDQVNAWVTQWGTSLQILGGTILAICMVLVGIKMGAKSVASNGASTGHRETIGAIFGLVIAGVLIGAALIIVPLFVGVGKNSGTTPAPAPPPAATDGG
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