NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311363_11268383

Scaffold Ga0311363_11268383


Overview

Basic Information
Taxon OID3300029922 Open in IMG/M
Scaffold IDGa0311363_11268383 Open in IMG/M
Source Dataset NameIII_Fen_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)614
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015119Metagenome / Metatranscriptome257N
F023143Metagenome / Metatranscriptome211Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0311363_112683831F015119N/AILVAWNGTTPRRLTGGALHFAHRFSLYLRAPEQNSTATYADLFWLLVSAIPTGAPLWSSLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0311363_112683832F023143AGGAGMEWVFMQSPQGEVREVEATAAALTPLMVAGWHQVPAPAATGPKPAAPVEEKK
Ga0311363_112683833F070324AGGAGMANINELMNGWGFGQQTAIGTANASGTFWRHTNLN
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Biomedical Sciences Research Center "Alexander Fleming"
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