Scaffold Ga0302148_1008697

Overview

Basic Information

• Taxon OID: 3300029916
• Scaffold ID: Ga0302148_1008697
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3058
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302148_10086971	F004301	N/A	QFSLFDARSVTATVDMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQQASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ
Ga0302148_10086973	F042119	GAG	METINREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYHDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVQFVASQDEDIPTPQVQLALF
Ga0302148_10086974	F003942	GGAG	MLGHRLNPTIHRYEDVELIEVHSKYLECRFLVAKDEWETGKTLLNIFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIEIQRQAGHAIYADHLSAMLYGTGLNPAHS