Scaffold Ga0311358_11016505

Overview

Basic Information

• Taxon OID: 3300029915
• Scaffold ID: Ga0311358_11016505
• Source Dataset Name: III_Bog_E1 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 568
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019534	Metagenome / Metatranscriptome	229	Y
F028874	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311358_110165051	F028874	N/A	SEGEALIEAFKNGQPFYTLTTWKAAPEMSGGSPVIVKQAVAQKPTQS
Ga0311358_110165052	F019534	AGGAG	MKKNTTTNNYRIRADQLQSLEIDRNGRVTPRLHDLDPFQNTLLSVLYPGIKVASVNVPAGPLDD