NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311358_10891541

Scaffold Ga0311358_10891541


Overview

Basic Information
Taxon OID3300029915 Open in IMG/M
Scaffold IDGa0311358_10891541 Open in IMG/M
Source Dataset NameIII_Bog_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)625
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003942Metagenome460N
F022571Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0311358_108915411F022571AGGAMQITVWSVAADDDNGTYASVHETELSAYRRLIELTVDSDDQDHVAKAEAFIEAGDLDGLDEWIHAEVIEPLNTYRVDQHKLDLPAASNTAPADENQHITR
Ga0311358_108915412F003942N/AELHSEYLECSFLVAKDEWETGKTLLTIFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIEIQRQAGHALYADHLSAMLYGTGPNPARS

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