NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311358_10697006

Scaffold Ga0311358_10697006


Overview

Basic Information
Taxon OID3300029915 Open in IMG/M
Scaffold IDGa0311358_10697006 Open in IMG/M
Source Dataset NameIII_Bog_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)747
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015781Metagenome / Metatranscriptome252Y
F056758Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0311358_106970061F015781AGGMNSAVDTMVAAPASSEAQLPSRVLEIRPEESKLVCVGADGREFALSRLIGSNLRIGDELLAPASAGTAIADTEIYIRKPS
Ga0311358_106970062F056758N/AMTEKGLSDSGRRSAELRYEWQSFLGLLPLLDLRPMDPVLYQRCLTAVWRSRKSAISRTDLQQAAGLGFQAETLGFDLLIAQLVRDRILEPIVSSPFHFQIRRWNWTNPESVYAADDRLSLIAISREEQTARFRMVGLLSARISNPRL
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