Scaffold Ga0311358_10293446

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311358_10293446

Scaffold Ga0311358_10293446

Overview

Basic Information
Taxon OID	3300029915 Open in IMG/M
Scaffold ID	Ga0311358_10293446 Open in IMG/M
Source Dataset Name	III_Bog_E1 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1385
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073235	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311358_102934461	F073235	GGCGG	LLSPWTESHSDLCKIFKLNDSAKAKLYFARVEYSPASMDTAHLLDTYKLKLDEARTPDWFTDEIREMVTLKLRDYIKSIIVDGDVDLLIGGQFIIAPGAKVACAHGMVINAICGGTVSAI

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