NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311358_10269744

Scaffold Ga0311358_10269744


Overview

Basic Information
Taxon OID3300029915 Open in IMG/M
Scaffold IDGa0311358_10269744 Open in IMG/M
Source Dataset NameIII_Bog_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1470
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027393Metagenome194N
F030957Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0311358_102697441F030957GAGMNTSTQIQPVNSLTYADVVGLNVGLTRMQGEDSVAFLERCYLSTTCRQDSTYEGEQDQICLQLGLSQWAGISISSTDSSMTITVCIGLVTVVQNGVTYNIPTVTMAPDDYWVWRMISDVVNDLNAITGVTAVLAGPDGPALQIAKQSNLFTVASEAITMTDQLLANANVIASSLTFSVAPGSYVFNPHTGELIFSGTLPPGLSVAYQYIAMPYNLVCSELGLFGLVEPSLATVGVSSG
Ga0311358_102697442F027393N/AISTAENLLKELYMMDNFSTLEYVQSYSMTAPLGAIAVEPNTWGILGASGTSLFYWDRREPLPGQLSAPAMTTEPLYGLNVKYNISQPGPTRYATLLPVPYGSASTVSTWRYLVMTPDGNYQALLPDGTLIAYSGGAGWQEGTLVPPVPVSVALTMIGTYVFVLECMGSGPNPTADEVPYPNLATPAGNTYDLSSIVPAIQGIAYDVMGRLWVWTGTNAVAIKPRYDGYILDPNSLAIYLTDTYDSVSFE
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