NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311359_10213890

Scaffold Ga0311359_10213890


Overview

Basic Information
Taxon OID3300029914 Open in IMG/M
Scaffold IDGa0311359_10213890 Open in IMG/M
Source Dataset NameIII_Bog_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1678
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044872Metagenome153N
F050080Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0311359_102138901F044872N/AEGQPPSDEQVLVAISETLFTVALNKDARQTVSCYLIQLYANHLFISDPTSEFGTCMRLARREIDELLSFTVLDRIAKYVWGRRDQFLDLWTRFAEDMEAYPQSTTHILQRVVVDTVQLLEAA
Ga0311359_102138903F050080AGGAGGMASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGMSVGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAPASTPGPVAVESTADALASAA
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