NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311362_10523285

Scaffold Ga0311362_10523285


Overview

Basic Information
Taxon OID3300029913 Open in IMG/M
Scaffold IDGa0311362_10523285 Open in IMG/M
Source Dataset NameIII_Bog_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1091
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034040Metagenome175Y
F036529Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0311362_105232851F034040GAGMNPTTETEAPYTDPEALLQARILKILKPCLSYWLDEQTLYLTLNLSRPAVTRARLEAALRELRDKAYLDFRVDPLSRLTEWRLTPSGHALAQPL
Ga0311362_105232852F036529N/AMIYFYRDALALLLMPVLAQEVPAPDPEHLSSWLIDAAALAAILLVFLKVIDHFKRRPSLEQELEKLLRQLRTELNQLRHEQTEHLTEVRGRVEGAHQRVDLLTHDLNNKLQRLPGEIVDLLHKTGVLAPPR

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