Scaffold Ga0311362_10121731

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311362_10121731

Scaffold Ga0311362_10121731

Overview

Basic Information
Taxon OID	3300029913 Open in IMG/M
Scaffold ID	Ga0311362_10121731 Open in IMG/M
Source Dataset Name	III_Bog_N3 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3329
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032201	Metagenome	180	Y
F032300	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311362_101217311	F032201	GGA	MITLFTPSFADEANTNAQNLTVKEVVSRLPPDRFRVILLGDGPPDPRIRARANTEILPWSRHGNTPRWLTRVLLSKVDVYFFPREGPFDALFLWCRRSFGLRIALVTYIVMALDEIHLGPAMTRAVREADCVVGNSQFVSQTVHDRFGVATGTIYDGMKPELFYPPPQDPPAGLKPIVLY
Ga0311362_101217312	F032300	N/A	MRVLLLHPDDPFDGSWAKQRWDSIVDLGRAPNSFYQEISARLGCPVFSISELAVEVEDFQTLREMFALGMGLVVDRFGIDWWDVISLMLQPELQDVRLAMRLAERLTGCRTLAVSRRSTTAEVVALHLGVPLQVLDRGYGKRLASELLRRGRAVANLGFVQARQVVYDKYDPHYRWRRKIAESPNSKTSRPSEPLVLLPSAYSNVTKTAFYYAGLLPEQKFLLVLARESGAVLPIPSNVRSIRLASFASGKWDRSELEKLKASWERMQRSLNEHPALRLSTQTGIMKRGAYWLRWGLVVRDAWLRVFETQSVVSCLCADDSNPYTRIPLLLAEQRSIPAVACHHGALDCRMAFKNRRFSKYLAKSQMESDYLQSTCGVAADRIVMGGSSSRSKKIASVWRENAPWISFFTEPYEADFWRADAIFREVLPRLCAVARRAGKTVVLKLHPFESVRQRTRLMNRVLNEADRKLVSLTDAPLSTEILSKTWCAVTVESTVAFECATVGIPTLLCGWLRHAYAGYGGQYVRFGAGRMLDSPDDLLRIPDFVAAFTPDSNLTDTPLRPVTSKMLSDVLCPTAERCSP

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