 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029911 Open in IMG/M |
| Scaffold ID | Ga0311361_10005040 Open in IMG/M |
| Source Dataset Name | III_Bog_N2 coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27544 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (32.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Abisko, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0477 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F034040 | Metagenome | 175 | Y |
| F036529 | Metagenome / Metatranscriptome | 169 | Y |
| F047459 | Metagenome | 149 | Y |
| F078152 | Metagenome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0311361_1000504010 | F034040 | N/A | MKPEPQAPYTDPDALLQARVLKILKPCLTYWLDEQTLYLTLNLSRPAVTRARLESALRELRDKAYVDFRVDPLSRLTEWRLTRSGHSLAQPL |
| Ga0311361_1000504025 | F047459 | AGGGGG | MRISLDGVWLTNDGVSDLQSWTDAHDVLLNGRQVVQDAQFLRAASAQPLARGNAVNALQFSVTRQHVSVAEAAAYVLTAFSSLPGSGTATIICGASGESLLTATFSAVLEEMPKCTFHGTRTDMTFVLRGGAMTMGAPLSINGVDGDAFTTVYGNSLGGSIDGGNLADALVPGVLNLDGGGFV |
| Ga0311361_1000504028 | F078152 | N/A | MKLTFLAETFFPFLVPEMDATFASSVGPQTVYPVGFSLEKALQIYWRVKDYRLIATGNGALGAVSQALAINQLLPPRNANVGTNTYFEVDGLNPTGPGDLVTGVGLTELIAGSGTVTASGGGTNPDAAFNLQVNLFYPAIFAPDPVIKFGGKWWPAMSVSCSVANTVTLDAGGALEIAYSCDSYDPGSTTEIGTFTFFGATVP |
| Ga0311361_100050409 | F036529 | GAG | MNFYPVFSMIPNFLLLSSYFLVAQEIPPPDAAHLSSWLVDAAALAAILLVFLKVIDHFKRRPSLEQELDKLLRQLRTELNQVRHEQTDHLAEVRGRVEGAHQRVDALTHDLNNKLQRLPGEIVDLLHKTGVLKAMN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |