NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311361_10000297

Scaffold Ga0311361_10000297


Overview

Basic Information
Taxon OID3300029911 Open in IMG/M
Scaffold IDGa0311361_10000297 Open in IMG/M
Source Dataset NameIII_Bog_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104209
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (68.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001355Metagenome / Metatranscriptome716Y
F032300Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0311361_1000029739F032300AGGMRVLLLHPDDRFDGSWTKQRWDSIVDLGRAPHSFYQQTSATLGCPVFSIYELAVEVGDLQTLRELFGLGMGQVVDRFGIDWWDIISLMLQPELQNVRLAIRLAKGIQGCRTLAVSRPSTTAEAVSLHLGVPLQVLDRGVGRRLAFDILHRGSAVANLGFVQARQVIYDKYDPLYVWRRKLAQAPDSRIAPPSEPVILLPSAYLNVTKTALHYAGLLPAQKFLLVLARESGAVSSIPSNVQSVRLASFASGKWDRAELDQLNAAWERMVSSLNEHPDLRLSVHTGILKRGARWLRWGLVVRDAWLRVYETRSVIGCLCGDDSNPYTRIPLLLAEQRGIPAVACHHGALDCRMAFKNRRFSKYLAKSQMEWDYLQSTCGVDAHRIVMGEPSPRSDKNASVWRENAPWITFFTEPYEADFWRADAIFREVLPRLCAVARRARKTVVLKLHPFESARQRTKLVKRVLSEADRELVSLSDAPLSADILSHTWCAVTVESTVAFECATVGIPAFLCGWLRHAYAGYGGQYVRFGAGHMLDSPDELLLIPDFVEAFSPDSNLTHQMQRLVSSRTLSDALCTTADRCIR
Ga0311361_1000029772F001355GGAGGMNYTITKRFPCSVCGLDTIRHAGWFLVVENRWLDRLKILSWHSSLAAQKDIKSVCCRDHLKRLIAHWLTQASLRLPPSQTVPMRIGSDPSLADFDLGPIEVGRLLGELAVHRESFSRVWSGSPESLECILDAILRIGVHSKPQALEFRLFEPEPTYGLSLQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.