NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311369_10239114

Scaffold Ga0311369_10239114


Overview

Basic Information
Taxon OID3300029910 Open in IMG/M
Scaffold IDGa0311369_10239114 Open in IMG/M
Source Dataset NameIII_Palsa_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1659
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004122Metagenome / Metatranscriptome452Y
F006481Metagenome / Metatranscriptome372Y
F074485Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0311369_102391141F074485AGGAGMQPVNGVDQAHEAATISSPPAEHSEDLPQLPEDLKVKLKEPLPREAVSPNPQKPGLSG
Ga0311369_102391142F004122N/AMTEKGLSDSGRRSAELRYEWQSFLGLLPVLDLQAMDPVMYQRCLTAVWRSRKSAISRTDLQQAAGLAFHEETLDFDLLVARLVREGILEPIVSSPFHFQIRRRNWTNPESAYAADDRLSLTAISREEQTARFRMLGLLDARILNPRLPEKRVQQIRKERDELERIYEATWLELENAIGSQAADAIRKNVEETREAGAVQLELPLGKKTTFDLEGEARCNQ
Ga0311369_102391143F006481AGGMNSVVDRIVAASASAEAQLPSRVLEIKQEESKLVCVGADGREFALSRLVGSNVRIGDDVLVPASIGTVTADTEVYIRKPSARRADVYQVKAGYAALPKLDKREEPFVRVQVAEGQLGINAIHIPCHVIRDYFFAANRKASWPSQPTFYYVLRLPQDVTYKELRLAYRLRRLEFQKQNASKAELATIERAYNMLADPDIRGIYDALIKDSAIPVPFPYSGFGSLLVQGERSAESGVFFANRILAFMPERRRRTVPVP
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