Scaffold Ga0311369_10020322

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311369_10020322

Scaffold Ga0311369_10020322

Overview

Basic Information
Taxon OID	3300029910 Open in IMG/M
Scaffold ID	Ga0311369_10020322 Open in IMG/M
Source Dataset Name	III_Palsa_E2 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7895
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053033	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311369_100203226	F053033	N/A	MLAKTSPLRLSPASHLMKPRSLLILILGVVAVVFTSRSLLAAPLHEDETIKLPCGREIKVLSISKVEYSKGVMALMVRYQTNLSIDDHKALSDEVDSVWKLTQKDVERLGYNEAIISSNEVPKGIIITESRMQNFIFERGPDGQWTRLNRADFMAAQ

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