Scaffold Ga0247271_113841

Overview

Basic Information

• Taxon OID: 3300029903
• Scaffold ID: Ga0247271_113841
• Source Dataset Name: Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1075
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota, Marcell Experimental Forest
• Coordinates
  • Lat. (^o): 47.50505
  • Long. (^o): -93.48901667
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000975	Metagenome / Metatranscriptome	816	Y
F056764	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247271_1138411	F056764	N/A	YPETFVRIREELPSYVRQGTRFLDLAMKIGSKIEELAEHRAARAFEELGEY
Ga0247271_1138413	F000975	AGGGGG	MPTRSDSRKFKTISRRELLKLTPVLALGAFAIPQLQTPLLKGGLGFSDWASARLFRSGHLAPTFDESELTPFDKFPINGYDVEDPQVDFDKWTLTVS