NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247271_102622

Scaffold Ga0247271_102622


Overview

Basic Information
Taxon OID3300029903 Open in IMG/M
Scaffold IDGa0247271_102622 Open in IMG/M
Source Dataset NameSoil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3919
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota, Marcell Experimental Forest
CoordinatesLat. (o)47.50505Long. (o)-93.48901667Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F006278Metagenome / Metatranscriptome377Y
F010114Metagenome / Metatranscriptome308Y
F017965Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0247271_1026223F010114GAGGMIIELNDDETRLLYNAILQQAQEHFTYASTSEVAERLYKLATIFGRPVRERASIASAFHG
Ga0247271_1026224F001596AGGAGMSWFHSSTVAVDARNYAAPVEIVACFQDERNVLGRLAFLITGDQATAEQAVVQACEMTLQGNSPFRDWLFEWAKAATIACAISHRTEAIRICEAAHKDRRCPHAEHLSQGDAEERAASLDLILGADAQQLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAASCHVLTWLHERHVKPVEEHHDASHAV
Ga0247271_1026225F006278GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQARCLVPKDVLPKGLIVDLTEVSYVDSVGEELLEWLASVGAVFVAGSVYGFTICDRLRLPPMQRIAERRKRRHGSSGDRSSIRHSHPVEAI
Ga0247271_1026226F017965AGGAMAEKMGHRDPLYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAEYLLHRSSPRPDRTATGKEF
Ga0247271_1026228F004823AGGAGMYVTTAVNGVPAIQRDGQSVLSVCHQNWDFANWLCALLNELGHKSELLLNEQDWKWLNTNDRAFRRTVHHA
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