Scaffold Ga0247271_100263

Overview

Basic Information

• Taxon OID: 3300029903
• Scaffold ID: Ga0247271_100263
• Source Dataset Name: Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15018
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota, Marcell Experimental Forest
• Coordinates
  • Lat. (^o): 47.50505
  • Long. (^o): -93.48901667
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028013	Metagenome / Metatranscriptome	193	Y
F029256	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247271_10026316	F029256	N/A	MAGIRHLSSSGFVYNPLLIDIGGGVDYKLPFKNFSWRLQGDYRHSHFVSATQNDYRASTGIVWRF
Ga0247271_10026317	F028013	GGAGG	VSKSAAAVLAFAGFILFSIPMSAQLGGLLPNGNVFGGVSYGQLTNVTNQQSYRGFEASGEDLLFTRFTHLGVVADASGYFRSGSKEYDXXXXAPSSMPWPASGT