NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247051_1000896

Scaffold Ga0247051_1000896


Overview

Basic Information
Taxon OID3300029901 Open in IMG/M
Scaffold IDGa0247051_1000896 Open in IMG/M
Source Dataset NameCryconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-B3a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDMAC, Technical University of Denmark
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13166
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (95.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location
Location NameGreenland: Kangerlussuaq
CoordinatesLat. (o)67.09Long. (o)-50.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048424Metagenome / Metatranscriptome148Y
F059437Metagenome / Metatranscriptome134Y
F065202Metagenome / Metatranscriptome128Y
F082044Metagenome / Metatranscriptome113Y
F102028Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0247051_100089610F059437GGAGVPIGNRYLQGQPVLPYANVKAYPSTDMFLDLQFIDHTNTPVVPTSVSIEIDDITNSVILFGPTVLTAAGVVGPPITYGAFASSMTLQVGPSVWTMTYPYVGSQLCQVGMQFTAIDSVTGQPFTSTSIIAVIELCALASVSGLAY
Ga0247051_100089614F065202GAGVPSKSPAQAKLMKAVSHGFKPTSGGPSVAVAKEFMHADMRKSAHKSKEGRSDHKRDMNDWAEGKRNTP
Ga0247051_10008963F082044GAGMSVTFKLVHEEGIRLRQQAAHKTEQIDEKTKILSTHVDWRFVKRPASDGKITEDCQQDEDSRRVDSSGRKAQLGTYTVHVTSGMNNLVVERKGKVTPFNFKNPSIRNQVRVQYQTLVESGRKTKEGKPVHEWKNDGAAKYIPPNTFDGVFIGDNQRAIVDEIPT
Ga0247051_10008967F102028GGAVSDDVTQNPKHSWGKWPKINPETVAPLRDDKPDLYNHQPTRFVSKDEAKGRGWKHFWTGEVCVTGHRAARYVSNVSTCVDCVRIEKGLLPVYGKGVPELEAARKRNYTQKNTPTVTGPLQPSSAEKLFLTKYAELKDFVLAAEACGRSEAEFLAILSWNATFRDAVNRLEESIGITHTQQITEFFDWTEDKRRSFLITYANTADMTKSLRSVGATNVQFHKELSDNGDFQRGFEDANQIARAVFDHAAAASATKGDARMLGRIAANFFPEKYGENLKMDLKVTQNLSMDQAHAQLTNLISRFDRQGLLSAAGEDEELVEEAEYKVLEPARNNAVDPDPEPESADSRPDPNSDLVSGS
Ga0247051_10008968F048424GGAGMILTPELEDVAQRVHILRDRVLVKILPYVNPHLLTPGVEIHKAVVVGVGYGRRQRRKTAFKQEMDAGAPVIGPGGKVMKFTKSNLSNRTLWFEDGIETGAIIPMTVKPGDVVEFSFRNITIVDFDRIGFHGIGELAFIWQQAIYSVDPDESLNECLMWQQSAGHDRKGNFMSGAEDWNRA
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