Scaffold Ga0247051_1000377

Overview

Basic Information

• Taxon OID: 3300029901
• Scaffold ID: Ga0247051_1000377
• Source Dataset Name: Cryconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-B3a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DMAC, Technical University of Denmark
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17835
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location

• Location Name: Greenland: Kangerlussuaq
• Coordinates
  • Lat. (^o): 67.09
  • Long. (^o): -50.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000386	Metagenome / Metatranscriptome	1203	Y
F000407	Metagenome / Metatranscriptome	1172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247051_100037718	F000407	N/A	MSLKLSLVFSMTLVVLGGCASSGYAVRAVPRIVAETVGKSVNRLQEAFGDPRKVDTTPTRQVYVWFLPATPPGAPVGLHGCEMEVTVEPHSQQVLGYSMTSIGWSKCGEVERRIRII
Ga0247051_10003777	F000386	N/A	MNESGTPELALHVPPDEMVKYIQDLMRLPHDEIAAATALSLAHRQWGGDTPLARAALLRWGALNLAFQDKRLETWTVTRERDKIQVPAALVAAAGVAPLIMTGERAVFDIPALLDATLEFQPAAGQA