Scaffold Ga0246001_1026837

Overview

Basic Information

• Taxon OID: 3300029889
• Scaffold ID: Ga0246001_1026837
• Source Dataset Name: Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat → Peat Microbial Communities From Marcell Experimental Forest Bog In Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.506
  • Long. (^o): -93.454
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005997	Metagenome / Metatranscriptome	384	Y
F017377	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0246001_10268371	F005997	N/A	RKEVGEMTRMHGADPSQQGFLRALFTRLVYAMTRRKVGRVVMPVQVAAHHSKLLWGYGQMEQSLGSSHLVDAALKDLAQLRVATLVGCPF
Ga0246001_10268375	F017377	N/A	DSFVASAAASIATGWSEPVPGRELHPLMSSAFHGALLRQLQGNSW