Scaffold Ga0246001_1006808

Overview

Basic Information

• Taxon OID: 3300029889
• Scaffold ID: Ga0246001_1006808
• Source Dataset Name: Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4461
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat → Peat Microbial Communities From Marcell Experimental Forest Bog In Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.506
  • Long. (^o): -93.454
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098491	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0246001_10068081	F098491	N/A	SHSDLVQTIRALDQLNRIRRLCPKGKPQWIKHYALTFASHPGSPILQFTFSKPGFCLVRRPTAINRLRHAETTKSFEAGTLDQTIIQEIISEYNSSMRNWEAEVERWNLQHGAALDAEMFLCPAYIYFKTSNSSPICNIAKQVHLALDGSQTRLGTDIWNGVLPAHRDELALLLQHLDQF