Scaffold Ga0246001_1000662

Overview

Basic Information

• Taxon OID: 3300029889
• Scaffold ID: Ga0246001_1000662
• Source Dataset Name: Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20178
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (45.83%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat → Peat Microbial Communities From Marcell Experimental Forest Bog In Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.506
  • Long. (^o): -93.454
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013515	Metagenome / Metatranscriptome	270	N
F016695	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0246001_10006624	F016695	N/A	MHHNQIIAVLREHGFAEGRLIANSKSGYYKRHRSHFVVFNAQVCNLRGRLLKQADLDLTLDGENLTQAARAAGENFYVLYENDPSPFWKPGSIPMSRVLQDAVWWTRIHREDEDLFLPMNSGPPERKRVRLRCSLGRWQNRPAYSVDLWDKPAWGIGRNMSGAVVQVLGHAPRGLRSAEKDEVFTAEISKTRGRPVRPVFYHRVGLLDYVWFSHGAAVPAILYDHIVRRLDSVRFTMHRDSLAIHLRQAGEVVGLFWPCCISAPEVLAHARRRLFGRFAKSTAPKGLSAAVTAVGQSSGIGKEL
Ga0246001_10006625	F013515	GGA	MRRHATRFGGIPTWFAIACENKGRRREFAGKPKGMNQQTRKTKLPDDGFMTAPGYPFSARDIFGDLRSRLAAEHRRPMSFERLAKMLGRSKSTTYNWFDIFHHPHVLGFLCLLERLPPAERQYFIEAHCRAYPTLDDPRLAHAPGKTAKLLELLNLKAGLTIITGGTDFSRTFVFTALAHAASRSGGKLPAAAGIDLHRSDLFVPVESLIYIDGDLGPDHARQLTQRIWPRVLTSGAPRLFFNRVWSSVPEVRDDLLRCAGFKHVVIAEEGALDVGDLKTRVSTPIHVLTLLTAKSVPEGILVNCRCVQRARHPGN