Scaffold Ga0311368_10662431

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311368_10662431

Scaffold Ga0311368_10662431

Overview

Basic Information
Taxon OID	3300029882 Open in IMG/M
Scaffold ID	Ga0311368_10662431 Open in IMG/M
Source Dataset Name	III_Palsa_E1 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	726
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050789	Metagenome / Metatranscriptome	145	N
F099394	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0311368_106624311	F050789	N/A	GLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRTTETHDGRAHVDAGEKQDIARKETVERCQ
Ga0311368_106624313	F099394	N/A	PRKSATIKTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI

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