Scaffold Ga0245314_101405

Overview

Basic Information

• Taxon OID: 3300029871
• Scaffold ID: Ga0245314_101405
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37545
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24697
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (30.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F083452	Metagenome	113	N
F093883	Metagenome	106	N
F102167	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245314_10140510	F058555	N/A	MGTKIGILHIMKSNFDKIITERYTPRNIQVKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHDEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRWMANKSRKLNRVKMLSKIIFSARNRNINKIYKITKKRTVKFNVSYLMDRLNIKLSKEGMMPISQRTVYRMIKEVLGMCCKTISDLYDEVKKNNGIVNTKDRKNVNIGHLRLSYRGTIMHIIIAEDYIRDVFLGVKGTEMSKAG
Ga0245314_10140527	F102167	N/A	MDINQIKKYLPLGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTAFSFHDKDMDKLRMLIGRAIMAVGYRNNPLTGDGNTAIK
Ga0245314_10140530	F083452	GGAGG	MSGRVKIKIKDKKPKIDVFKVIESRFKNMNELRDLIDMDPRKGLVMIRDGAGFREVERGGCPHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0245314_10140534	F057001	AGG	MLIQVPRVRANLMTNKELNKVQDEVKKANEKTLTGAVKLWCQLFKSGKEINEILKENEIKVDKSIVPALVNLAKDKEVVIQLCKDILPRINNTFCAYKEVEREYYDKNEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGTDKRIVKCAVPLKRYTFALIAKCVTYYLTHPKNER
Ga0245314_1014054	F093883	GAG	MIIMRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVAEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKADE