Scaffold Ga0245296_100162

Overview

Basic Information

• Taxon OID: 3300029856
• Scaffold ID: Ga0245296_100162
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37285
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 123326
• Total Scaffold Genes: 148
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (43.92%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245296_100162103	F083451	N/A	MDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVNAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE
Ga0245296_10016212	F089592	N/A	MKDILKSKEVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKVPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGDKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKKVKDVKKKEDVGKGDKEE
Ga0245296_100162123	F078005	N/A	MKKSEFVKELEKIIDMVKTEDDSNYEVSVMNIEMNLEVEADVMTGMDDIDFTCLMSEVYKQKAIKAIMMEKDDDEDN
Ga0245296_100162138	F078006	AGGAGG	MSRYDRDIKALAGRKEYHDRTCADMVRGRFPAPWHNLNVSSMEDNILKRAAAELKGAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0245296_100162141	F080673	GGA	MKLQDEALLYLRDNITKDEAYYILTTDKDIIEILIADKKDGSNRIKILDTEYTVEKDDMLLLFDTDGIIDECLLVATYIGVNMYFRRQDVNAILNNINREKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL
Ga0245296_100162147	F057001	AGG	VTNKELNKVQNEVKTSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNDQDKNKKLKMNEIEDIAILGSSHKRFGYNEPIEFDFGIYYEMFNGTDKRIVKCAVPIKRYTFSLIAKCVTYYLTHPKLYI
Ga0245296_10016219	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGDPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMAVIPEAITRKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLDLSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFCFLDDWVSGERRTGWNDDNMSGRGLEHLTGFIAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAAYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0245296_10016223	F075481	AGGAGG	MMRLRISLRAIVCLGLSLFLSSCGSRRQVSDTSIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTDKDIDPATGERPVSSVTDAHIVIGRRDSTVTTDFLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0245296_10016242	F064725	N/A	VRVDWIFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNIMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI
Ga0245296_1001625	F093883	N/A	MEENKDIKKEIRDYLKEESDTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDKTSGFVFYDDKERLRYADKELEDMFHDMSVKEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0245296_10016261	F050794	AGCAG	VVSKPLPILFLIEDNFLIYKNISLSATFVKAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVDVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMREAEKLELDTDAIKAMMRDLLNELKDDIDLNILIFDVSQLLIKYNLFRLEAITEQEFKGSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYN
Ga0245296_10016274	F098313	GGA	MREMEFDLVIYPLKLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFVNLVRDRYDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD