Scaffold Ga0245277_1000223

Overview

Basic Information

• Taxon OID: 3300029845
• Scaffold ID: Ga0245277_1000223
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35990
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84884
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (18.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F094005	Metagenome / Metatranscriptome	106	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245277_100022372	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDIKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0245277_100022374	F105375	N/A	MKNNETFQTTQPLDKLVTNLGLQIQGLFSLDLEETLDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINGISSNIMQITFTV
Ga0245277_100022382	F044555	N/A	MKTTNPSSRITISQNGNQILFCKVYKEPNYILSMSNEEILELISGLDYIDIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245277_100022387	F060985	GGA	MSNIDEKVKNNFTIEMRIFENYEKVKHEIIKVIDFLKHAETNMGMCKIFDNQNHEFWHSVIKPWFQPERFGITHLWFSSGFSHIGYGEYHIIKGNRWLKTPIDRIDREYYIFGHWFPTYKKYIPYRIRILKLALKDLERI
Ga0245277_100022388	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYAFNDGIGGYPFKKYAIPYTFILVVWFIVFLYGLVS
Ga0245277_100022389	F094005	N/A	MKKETIKLKEGDQVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLVEKLNE