Scaffold Ga0245273_100828

Overview

Basic Information

• Taxon OID: 3300029842
• Scaffold ID: Ga0245273_100828
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35636
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35462
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (35.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245273_10082822	F106193	N/A	VGCNTCKEKALKAERERIERSMMNRASSTVVSDMEYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAKYIKP
Ga0245273_10082829	F075481	AGAAG	MMRLRISLRAIFCLGLSLSLSSCGSRRQVSEASIDSGLISRIETMIDEVMDRKIVEIKTSDLNADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSVGVNKTRNDIKDLDNKIDIKSKDVDDKKGSRWPIAWIVAGISMILLVLVYILNRIKIL
Ga0245273_1008283	F064725	GGA	VIYSNGYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGTGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKMV
Ga0245273_10082830	F089590	N/A	MTLVMDNKGMLDKIGALWNIAIAYGTSCWAYFQPVHHLLEVLLVVLLANFIARLIQSARRWKVRRSRKRRFSLYRWFREVRLVGILKEFFLSCFIVMTLCVIYKTLSIEEDDASAILVVTKYGVYAALVAYVMLFLNTIGEAFPDTYIVKVFKSIFNRVNILKLFGSAKSLPDDAFDDIKKIADDEVKDKS
Ga0245273_10082832	F042095	N/A	MAKTLYKYEASLNKLVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNSFVELRSRKPGIANVDWGDGIKEQFPMTKVQGEDDYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQTCKMTAFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYINLRNVGARMTAMPKAITSKTEVYYLSMFNMLDLRDIESSGIRNIKNMKNLQTLKLSSCYLDRYIKEFNDLPKLTSLDITQGPSDMWNYFDINTLPFFEVDKINPNITDFIFLDDWMNGERRTGWNDDNMSGRGLEHLTSFIAANSNSLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDTIYPTENQRPSGMEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA
Ga0245273_10082838	F089591	AGGAGG	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEAADFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDVDPELPDYLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK
Ga0245273_10082839	F089592	N/A	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKAKKVKDIKKKDDVEEGDKVKEE