Scaffold Ga0134606_10040432

Overview

Basic Information

• Taxon OID: 3300029827
• Scaffold ID: Ga0134606_10040432
• Source Dataset Name: Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - M1047
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Battelle Memorial Institute
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1567
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion

Source Dataset Sampling Location

• Location Name: USA: Barataria Bay
• Coordinates
  • Lat. (^o): 29.468
  • Long. (^o): -89.882
  • Depth (m): .08 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096594	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134606_100404322	F096594	AGGAGG	MAYIVCMGTFPAHVAMEVGKTFQKLPKLPDFVITEHVFNTAAGDYTFFSIYKIEDDSKYFEGLKAITKRYSGYMGIEGYKYHLYPVLEAKDALAMVGL