NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134835_1073139

Scaffold Ga0134835_1073139


Overview

Basic Information
Taxon OID3300029825 Open in IMG/M
Scaffold IDGa0134835_1073139 Open in IMG/M
Source Dataset NameLiquor fermentation pit mud microbial communities from Luzhou, China - Meta-1-2-440-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChongqing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)806
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location
Location NameChina: Luzhou
CoordinatesLat. (o)28.88Long. (o)105.45Alt. (m)Depth (m).01
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073228Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0134835_10731392F073228GGCGGMAIITIGDIMDVNNSKYGEFLYKIVMVFPHNLEVDKTELARLIKINNNILTFERKNGEKFTLDERDVEHIDLFRSPNYRGGE

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