Scaffold Ga0134835_1026355

Overview

Basic Information

• Taxon OID: 3300029825
• Scaffold ID: Ga0134835_1026355
• Source Dataset Name: Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-1-2-440-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chongqing University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2097
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location

• Location Name: China: Luzhou
• Coordinates
  • Lat. (^o): 28.88
  • Long. (^o): 105.45
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043951	Metagenome / Metatranscriptome	155	N
F054061	Metagenome / Metatranscriptome	140	Y
F103499	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134835_10263551	F054061	GAGG	MDETFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNIDWGGLLRLHELIHDRIAL
Ga0134835_10263553	F043951	AGGAG	MEHLSLGRPIEASLGPRYQCPICGLKLWTIRAPWTGWQEWYRTEDGRRHYKHSCNIMRDALVMFRWMFGQDW
Ga0134835_10263558	F103499	N/A	IQQTYPDGSGGRLNIDWGGLLRLHELIHDRIALEGYVCETCDTKGCHRPATWEIECRGAGVSGRLIYVCDEHAPDEAILSPQDEIRRCA