Scaffold Ga0134854_1008972

Overview

Basic Information

• Taxon OID: 3300029822
• Scaffold ID: Ga0134854_1008972
• Source Dataset Name: Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-3-30-T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chongqing University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4325
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location

• Location Name: China: Chengdu
• Coordinates
  • Lat. (^o): 30.65
  • Long. (^o): 104.06
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y
F075995	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134854_10089723	F047639	AGGAG	MVMRFKKSNYIRVIKFNTDKSSNITYHKSKTYKPNFLINPNHIFFANGYRTIVISDKSAETINPLDFNSKFNPTDFETAIESKLIRDTFSTLKPKLIDTTTIMLLINLIFTFGVLYLLLKWQGMI
Ga0134854_10089724	F029085	GGA	MENIKDDKLKIDELLEENISEQLENGSSDLVSLIAISELTNLNKLKVITRVKEEQVPVLTKLYMYAETFNIPFIKNMADNILQLQVSIRGLGRKELVNIVRESTPTEVKRGIFGTKDVFR
Ga0134854_10089725	F075995	N/A	MSYRKLKKANVYISKNFKKVFYGMRTLYVKDLRNTRYSDFSGKVYVRYKNKYYQAHFDGRNTYNVRL