Scaffold Ga0134854_1007606

Overview

Basic Information

• Taxon OID: 3300029822
• Scaffold ID: Ga0134854_1007606
• Source Dataset Name: Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-3-30-T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chongqing University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5045
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus sulfaticallidus → Archaeoglobus sulfaticallidus PM70-1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location

• Location Name: China: Chengdu
• Coordinates
  • Lat. (^o): 30.65
  • Long. (^o): 104.06
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080199	Metagenome / Metatranscriptome	115	N
F088950	Metagenome / Metatranscriptome	109	N
F103498	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134854_10076065	F103498	GGA	MLDQDAILLRMKKMDNTETCELQHCRLRTDILCEVQRREEKQDERFLALIEELRHDWKETKKEVSLIKDTMITGFITLIITIIGVFATYILMNVIGFI
Ga0134854_10076067	F080199	GGAG	MRTVVYGVEETNAKLSQILAVVQDNVDNTLDLFSGDMTKEIKDSAPYDTGRYMSSWFYERKESLKYAIISQNSYVPYNTFLVFGTEKFKPIANEPRYKYSDSERGIIHDVRQIKFIYSIKLGQLIKRVNLIGANISLAGL
Ga0134854_10076068	F088950	N/A	MDIDGVLKELADFIEEKVPELTNKVTTIYPETERFAPPTIVIDIVAGRETLIVDGTKTHELVRIAIVSDKKSEINRIFNLITNAFLDYGRELTLCAYGGVSYVSPVAPAFVEKNSVLKRELDIVVIEFRKRG